Skip to content
Skip to content

Practical accounting administration guide · By Yes AI

Preparing SMSF audit documents with automation

Published 5 min read

Each year an SMSF's trustees must have the fund audited by an approved SMSF auditor before lodging the annual return. Much of the preparation is collecting and indexing documents and answering auditor queries. This guide covers how administrators and accountants can automate that preparation. The audit opinion, independence and compliance judgements stay with the auditor.

Quick answer

Automation can help SMSF administrators assemble the audit file: collecting bank and investment statements, checking them against the ledger, indexing documents to the auditor's request list and tracking queries. The ATO requires trustees to appoint an approved auditor at least 45 days before the annual return is due, give financial statements before the audit starts and answer auditor requests within 14 days. The audit itself stays with the auditor.

SMSF administrator on the Gold Coast organising bank and investment statements into labelled folders at a desk
Statements filed to a standard structure each year make the auditor's request list quicker to answer.

What does the ATO require of trustees for the audit?

According to the ATO, trustees must appoint an approved SMSF auditor each year, no later than 45 days before the SMSF annual return is due. The audit must be complete before the return is lodged, and it is required even in a year with no contributions or payments. Before the audit starts, trustees must give the auditor a statement of financial position and an operating statement for the previous financial year. If the auditor asks for more information, trustees must provide it within 14 days. The auditor must be registered with ASIC and independent of the fund.

Which documents does an auditor ask for?

Request lists differ between auditors, so work from the list your auditor sends. The ATO notes that auditors must hold sufficient documentation to support their findings, and it has published information on the evidence needed for matters such as verifying the market value of fund assets. Lists commonly cover the groups below, and automation can be set up to collect and file each group the same way every year. Keep each auditor's previous request list on file for the fund, so the expected documents can be prepared before the new list arrives.

  • Financial statements, the general ledger and year-end account balances.
  • Bank statements for every fund account for the full year.
  • Investment holding and transaction statements, and year-end valuations.
  • Contribution and benefit payment records.
  • Trustee minutes, resolutions and the trust deed.
  • The signed audit engagement letter and representation letter.

How can automation assemble the audit file?

Preparation involves gathering documents from banks, investment platforms, trustees and earlier years, then checking that each statement covers the right period. Automation can download or receive statements, name and file them to a standard structure, check that each bank account has statements covering 1 July to 30 June with no gaps, and compare closing balances with the ledger. Where a balance or period does not match, it raises a task for staff. The output is an indexed file that follows the auditor's request list, plus a list of what is still missing.

How should auditor queries be tracked?

Each auditor query should become a task with the date received, the person responsible and a due date inside the 14 days the ATO allows trustees to respond. Group queries by fund, so the administrator can see which funds are waiting on trustees and which on the practice. Automation can draft the request to trustees for a missing document using the practice's approved wording, send reminders and file the response against the query. The reply to the auditor goes from a person who has checked the answer.

What must stay with the auditor?

The ATO describes the auditor's role as examining the fund's financial statements and assessing compliance with superannuation law. The auditor provides the audit report, advises trustees of breaches and must report certain contraventions to the ATO. Auditors must hold sufficient documentation for their findings, including the audit plan, evidence, analysis and reasoning on matters that need professional judgement. Automation on the administrator's side prepares documents for the auditor and does not draft audit conclusions. Because the auditor must be independent of the fund, keep the administrator's preparation workflow separate from the auditor's own work and systems.

How do you set it up across a book of funds?

Start with funds that have simple structures: one or two bank accounts, listed investments and no property. Build the folder structure and naming convention, connect the statement sources, and run the completeness and balance checks. Compare the assembled file with what the auditor requested last year for the same funds. Add funds with property, unlisted assets or pensions later, since valuations and pension documents need more checking. Record for each fund who answers queries and which auditor it uses.

SMSF audit preparation: who does what

TaskAutomationAdministrator or accountantAuditor
Appoint the auditor 45 days before the return is dueReminder on the fund's calendarPrompts the trusteesAccepts the engagement with the trustees
Collect bank and investment statementsRetrieves, files and checks periodsResolves gaps with trustees and providersNone
Check statement balances against the ledgerCompares closing balances and flags differencesInvestigates and correctsTests as part of the audit
Index the audit fileBuilds the index against the request listChecks it before sendingReviews the evidence
Answer auditor queries within 14 daysCreates tasks, drafts trustee requests, sends remindersChecks and sends the answersRaises the queries
Audit opinion and contravention reportingNoneNoneForms the opinion and reports to the ATO

Practical checklist

  • Each fund's auditor and annual return due date are recorded, with the appointment reminder set.
  • Statements cover the full financial year for every account, with gaps listed.
  • Closing balances are compared with the ledger before the file goes to the auditor.
  • The audit file is indexed against the auditor's own request list.
  • Every auditor query has an owner and a due date inside 14 days.
  • The administrator's workflow drafts no audit conclusions.
  • Trustee requests use approved wording and go to the trustee contacts on file.

Common questions

Can AI audit an SMSF?

No. The audit must be done by an approved SMSF auditor registered with ASIC, who must be independent of the fund and forms the audit opinion. The administrator's automation prepares documents and tracks queries for the auditor. What auditors use in their own work is a matter for them and their auditing standards.

What happens if trustees miss the 14-day deadline?

The ATO states that trustees must provide requested information within 14 days. A late response can hold up the audit, and the annual return cannot be lodged until the audit is complete. Tracking every query with a due date and reminders makes a late response less likely and shows where each query is waiting.

Is a statement of financial position needed before the audit starts?

Yes. The ATO says trustees must give the auditor a statement of financial position and an operating statement for the previous financial year before the audit can start. Build that into the preparation timeline, so the auditor is not waiting on the financial statements while documents are being collected.

How do we check an auditor's registration?

ASIC keeps a public register of approved SMSF auditors, which you can search through its Professional Registers Search. The ATO notes that a registered auditor has an SMSF auditor number, which trustees need for the annual return. Record the number for each fund with the auditor's details.

Can trustees upload documents straight into the audit file?

They can upload to a collection point, such as a portal or a monitored mailbox, and the administrator's workflow then files and checks each document. Letting trustees add files directly to the indexed audit file makes it harder to confirm what was checked. Keep one person responsible for what goes to the auditor.

Does this replace our SMSF accounting software?

No. Fund accounting software keeps the ledger and produces the financial statements. Automation sits around it, collecting and filing documents, checking periods and balances and tracking queries. Check what your SMSF software already does before building anything, because some products include document and query features.

Sources and further reading

Continue planning

Plan the administration around professional review

Describe the administrative task, systems and review responsibilities. We can discuss document intake and staff handovers. Use a fictional example without client records or credentials. Accounting judgements, advice and sign-off remain with your practice.